- Santa Ana
- Santa Ana
- Santa Cruz
- Santa Fe
- Santa Justa
- Santa Justa Tuno
- Santiago
- Santo Rosario
- Santo Rosario
- Santo Rosario Hacienda
- Santo Tomas
- Seco Island
- Semirara Island
- Semirara Islands
- Semiraramaistan Island
- Sermon
- Sibaton Island
- Sibay
- Sibay Island
- Sibolo
- Sibolon Island
- Sibutong Island
- Sido
- Simbula
- Sinaja
- Sinundulan
- Soloc
- Suligan
- Sumaray
- Sumuc